Projects

Shanshan Ren

PhD student at the Computer Engineering Group of the Faculty of Engineering, Mathematics and Computer Science (EEMCS/EWI), Delft University of Technology.

Research

Optimizing Genomics Computational Pipelines on High-Performance Systems

Publications Shanshan Ren

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    2016

  1. J.W. Peltenburg, S. Ren, Z. Al-Ars, Maximizing Systolic Array Efficiency to Accelerate the PairHMM Forward Algorithm1596_maximizing_systolic_array_efficiency_to_accelerate_the_pair.pdf (December 2016), IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2016), 15-18 December 2016, Shenzhen, China [Conference Paper]
  2. S. Ren, K.L.M. Bertels, Z. Al-Ars, Exploration of Alternative GPU Implementations of the Pair-HMMs Forward Algorithm1562_exploration_of_alternative_gpu_implementations_of_the_pair.pdf (December 2016), 3rd International Workshop on High Performance Computing on Bioinformatics (HPCB 2016), 15-18 December 2016, Shenzhen, China [Conference Paper]
  3. 2015

  4. S. Ren, V.M. Sima, Z. Al-Ars, FPGA Acceleration of the Pair-HMMs Forward Algorithm for DNA Sequence Analysis 1525_fpga_acceleration_of_the_pairhmms_forward_algorithm_for_dn.pdf (November 2015), International Workshop on High Performance Computing on Bioinformatics (HPCB 2015), 9-12 November 2015, Washington DC, USA [Conference Paper]