Nauman Ahmed

Research

Acceleration of genome analysis on accelerator based architectures

Publications

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    2017

  1. N. Ahmed, H. Mushtaq, K.L.M. Bertels, Z. Al-Ars, GPU Accelerated API for Alignment of Genomics Sequencing Data1662_gpu_accelerated_api_for_alignment_of_genomics_sequencing_da.pdf (November 2017), IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2017), 13-16 November 2017, Kansas City, USA [Conference Paper]
  2. N. Ahmed, K.L.M. Bertels, Z. Al-Ars, Predictive Genome Analysis Using Partial DNA Sequencing Data1651_predictive_genome_analysis_using_partial_dna_sequencing_dat.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
  3. H. Mushtaq, N. Ahmed, Z. Al-Ars, Streaming Distributed DNA Sequence Alignment Using Apache Spark1645_streaming_distributed_dna_sequence_alignment_using_apache_s.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
  4. 2016

  5. N. Ahmed, K.L.M. Bertels, Z. Al-Ars, A Comparison of Seed-and-Extend Techniques in Modern DNA Read Alignment Algorithms1597_a_comparison_of_seedandextend_techniques_in_modern_dna_re.pdf (December 2016), Workshop on Accelerator-Enabled Algorithms and Applications in Bioinformatics (WACEBI 2016), 15 December 2016, Shenzhen, China [Conference Paper]
  6. Z. Al-Ars, N. Ahmed, K.L.M. Bertels, Early DNA Analysis Using Incomplete DNA Datasets (November 2016), filed in Europe [Patent]
  7. 2015

  8. N. Ahmed, V.M. Sima, E.J. Houtgast, K.L.M. Bertels, Z. Al-Ars, Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm1500_heterogeneous_hardwaresoftware_acceleration_of_the_bwamem.pdf (November 2015), International Conference On Computer Aided Design (ICCAD 2015), 2-6 November 2015, Austin, USA [Conference Paper]