Nauman Ahmed

PhD student at the Computer Engineering Group of the Faculty of Engineering, Mathematics and Computer Science (EEMCS/EWI), Delft University of Technology.

Research

Acceleration of genome analysis on accelerator based architectures

Publications

Please note: This page contains links to PostScript files of articles that may be covered by copyright. You may browse the articles at your convenience. (In the same spirit as you may read a journal or a proceeding article in a public library). Retrieving, copying, or distributing these files, however, may violate the copyright protection law. We recommend that the user abides international law in accessing this article list.

    2017

  1. H. Mushtaq, N. Ahmed, Z. Al-Ars, Streaming Distributed DNA Sequence Alignment Using Apache Spark1645_streaming_distributed_dna_sequence_alignment_using_apache_s.pdf (to appear: October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
  2. N. Ahmed, K.L.M. Bertels, Z. Al-Ars, Predictive Genome Analysis Using Partial DNA Sequencing Data1651_predictive_genome_analysis_using_partial_dna_sequencing_dat.pdf (October 2017), 17th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017), 23-25 October 2017, Washington DC, USA [Conference Paper]
  3. 2016

  4. N. Ahmed, K.L.M. Bertels, Z. Al-Ars, A Comparison of Seed-and-Extend Techniques in Modern DNA Read Alignment Algorithms1597_a_comparison_of_seedandextend_techniques_in_modern_dna_re.pdf (December 2016), Workshop on Accelerator-Enabled Algorithms and Applications in Bioinformatics (WACEBI 2016), 15 December 2016, Shenzhen, China [Conference Paper]
  5. Z. Al-Ars, N. Ahmed, K.L.M. Bertels, Early DNA Analysis Using Incomplete DNA Datasets (November 2016), filed in Europe [Patent]
  6. 2015

  7. N. Ahmed, V.M. Sima, E.J. Houtgast, K.L.M. Bertels, Z. Al-Ars, Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm1500_heterogeneous_hardwaresoftware_acceleration_of_the_bwamem.pdf (November 2015), International Conference On Computer Aided Design (ICCAD 2015), 2-6 November 2015, Austin, USA [Conference Paper]
Nauman Ahmed